Index Gateway

Omics Catalog Sitemap

A dynamic, human-readable index of all public research datasets registered within the Bioinformatics Academic Association of Thailand (BAT) network.

24 May 2026
Environmental Science
Impact: 1

In this study, the objective was to investigate the key factors influencing the optimal performance of microbial fuel cells (MFCs) in treating wastewater with high sulfide concentrations, specifically focusing on wastewater from the processed canned pineapple industry. The research involved conducting experiments using different hydraulic retention times, namely a 2-day (M1) and 4-day (M2) retention period, to evaluate the effects of varying seasonal production levels, characterized as low (L) and high (H). By examining these parameters, the study aimed to gain a comprehensive understanding of how MFC performance can be optimized for the treatment of sulfide-rich wastewater in the canned pineapple industry.

Organisms: Multispecies
Affiliation: King Mongkut's University of Technology Thonburi (KMUTT)
1 linked publication
View Dataset Details
10 Jun 2026
Agriculture / Plant Science
Impact: 0

Tomato CH154 Whole genome sequence

Dataset Registry ID: BATD000049

We study the variation in tomato population for identify variant associated with precise phenotype use in variety improvement.

Organisms: Solanum lycopersicum
Affiliation: Kasetsart University (KU)
Funding Agency: Fundamental Fund, TSRI, PERDO
1 linked publication
View Dataset Details
10 Jun 2026
Agriculture / Plant Science
Impact: 0

Mango diversity

Dataset Registry ID: BATD000053

We sequenced 94 mango germplasm accessions at the Pak-chong Research Station, Kasetsart University.

Organisms: Mangifera indica
Affiliation: Kasetsart University (KU)
Funding Agency: PERDO
10 Jun 2026
Health Science / Medicine
Impact: 0

Our work sheds light on novel therapeutic options for cholangiocarcinoma and offer insights on corresponding predictive biomarkers for different patient subgroups, offering opportunities for designing effective clinical trials and for realizing the precision medicine concept in this rare cancer type. We build multi-omics sequencing and drug response profiling of cholangiocarcinoma to enables explore genomic, transcriptomic and drug response data.

Organisms: Homo sapiens
Affiliation: Mahidol University
Funding Agency: NSTDA, Advanced Research in Pharmacology Fund, Basic Research Fund, Chalermphrakiat Grant
1 linked publication
View Dataset Details
11 Jun 2026
Liver Cancer, HCC, iCCA, Health Science / Medicine
Impact: 0

TIGER-LC Fecal Microbiome

Dataset Registry ID: BATD000057

Metagenomics analysis of fecal samples from Thai HCC and intrahepatic CCA patients

Organisms: Multispecies
Affiliation: Chulabhorn Research Institute
Funding Agency: Fundamental Fund, TSRI, US NCI
1 linked publication
View Dataset Details
10 Jun 2026
Health Science / Medicine
Impact: 0

The aim of this study was to characterize the clinical features and outcomes of patients with JAK2 V617F- and CALR-unmutated essential thrombocythemia (ET) and to identify potential driver mutations through whole-exome sequencing (WES).

Organisms: Homo sapiens
Affiliation: Chiang Mai University (CMU)
Funding Agency: CMB
10 Jun 2026
Agriculture / Plant Science
Impact: 0

We study the diversity, population structure, genomic variation, and evolutionary relationships of Xanthomonas euvesicatoria pv. euvesicatoria and pv. perforans causing bacterial spot disease in tomato and pepper.

Organisms: Xanthomonas
Affiliation: Kasetsart University (KU)
Funding Agency: PERDO
2 linked publications
View Dataset Details
10 Jun 2026
Agriculture / Plant Science
Impact: 0

Transcriptome analysis reveals key defense genes associated with resistance to banana blood disease. Key molecular processes, including xyloglucan endotransglucosylase hydrolases, receptor-like kinases, and glycine-rich proteins, were enriched at 24 h post-inoculation, highlighting the activation of effector-triggered immunity (ETI).

Organisms: Musa spp.
Affiliation: Kasetsart University (KU)
Funding Agency: Fundamental Fund, TSRI
1 linked publication
View Dataset Details
10 Jun 2026
Health Science / Medicine
Impact: 0

We sequence 38 NSCLC patients whose cell-free DNA were extracted during chemotherapy and TKI inhibitors. The correlation with clinical outcome were accessed can complement with the estimation of ctDNA. A machine learning model were also developed to predict the final clinical outcome.

Organisms: Homo sapiens
Affiliation: Chulabhorn Royal Academy (CRA)
12 Jun 2026
Health Science / Medicine
Impact: 0

The aim of this study was to identify potential biomarkers of early schistosomiasis using an untargeted metabolomics approach.

Organisms: Mus musculus
Affiliation: Chulabhorn Royal Academy (CRA)
Funding Agency: Innovation Project grant, New Discovery and Frontier Research Grant, ICTM grant
1 linked publication
View Dataset Details
12 Jun 2026
Health Science / Medicine
Impact: 0

No study focused on understanding the progression of intestinal disease. Therefore, we aimed to identify early gut biomarkers of infection with three Schistosoma spp. and progression of intestinal pathology.

Organisms: Mus musculus
Affiliation: Chulabhorn Royal Academy (CRA)
1 linked publication
View Dataset Details
12 Jun 2026
Health Science / Medicine
Impact: 0

In this study, we applied untargeted metabolomic profiling to investigate potential urinary biomarkers of early infection with three intestinal species of Schistosoma using a mouse model.

Organisms: Mus musculus
Affiliation: Chulabhorn Royal Academy (CRA)
Funding Agency: CRA grant
1 linked publication
View Dataset Details
12 Jun 2026
Health Science / Medicine
Impact: 0

In this study, we combined metabolomics and virtual screening to identify potential anthelmintic candidates for trichinellosis and ABZ-resistant nematodes.

Organisms: Trichinella spiralis
Affiliation: Chulabhorn Royal Academy (CRA)
Funding Agency: CRA grant
1 linked publication
View Dataset Details
24 May 2026
Health Science / Medicine
Impact: 0

The Thai Pediatric Cancer Atlas (TPCA) Consortium multi-omics dataset is a comprehensive resource designed to advance precision medicine for high-risk childhood malignancies, specifically focusing on neuroblastoma, osteosarcoma, and pediatric brain tumors. To capture a holistic view of tumor biology and inherited risk, the dataset integrates four distinct molecular profiling modalities: Whole Exome Sequencing (WES) to identify somatic mutations and actionable targets in tumors, Germline Whole Genome Sequencing (WGS) to detect heritable cancer predispositions, RNA-Sequencing (RNA-Seq) to uncover gene expression patterns and oncogenic fusions, and proteomic analysis to map active protein signaling cascades. By uniting these multi-level molecular insights with clinical data across major collaborative medical institutions, this dataset serves as a critical foundation for discovering novel biomarkers, understanding tumor evolution, and developing personalized, targeted therapeutic strategies for pediatric oncology patients.

Organisms: Homo sapiens
Affiliation: Thai Pediatric Cancer Atlas (TPCA) Consortium
Funding Agency: HSRI
2 linked publications
View Dataset Details
11 Jun 2026
Agriculture / Plant Science, Environmental Science, Microbial Science
Impact: 0

Anaerobic digestion (AD) has been used for wastewater treatment and production of renewable energy or biogas. Propionate accumulation is one of the important problems leading to an unstable system and low methane production. Revealing propionate-degrading microbiome is necessary to gain a better knowledge for alleviation of the problem. Herein, we systematically investigated the propionate-degrading cultures enriched from various anaerobic sludge sources of agro-industrial wastewater treatment plants using 16S rRNA gene sequencing. Different microbial profiles were shown even though the methanogenic activities of all cultures were similar. Interestingly, non-classical propionate-degrading key players Smithella, Syntrophomonas, and Methanosaeta were observed as common prevalent taxa in our enriched cultures. Moreover, different hydrogenotrophic methanogens were found specifically to the different sludge sources. The enriched culture of high salinity sludge showed a distinct microbial profile compared to the others, containing mainly Thermovirga, Anaerolinaceae, Methanosaeta, Syntrophobactor, and Methanospirillum. Our microbiome analysis revealed different propionate-degrading community profiles via mainly the Smithella pathway and offers inside information for microbiome manipulation in AD systems to increase biogas production corresponding to their specific microbial communities.

Organisms: Multispecies
Affiliation: King Mongkut's University of Technology Thonburi (KMUTT)
Funding Agency: Thailand Research Fund (MRG6080183), KMUTT Research Fund, Joint Research Program Under the Cooperation Between Thailand and Japan (NRCT–JSPS) 2017, KMUTT 55th Anniversary Commemorative Fund, Petchra Pra Jom Klao Master’s Degree Research Scholarship from King Mongkut’s University of Technology, Thonburi
1 linked publication
View Dataset Details